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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22519756_22524842_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22519756 - 22524842
Intron Length:
5087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
ATCACAGTAATT
Flanking Amino Acid:
PAHFSFVPARRTDGRRWSLA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
79.6
0.67
0.7
76
26.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
47
-0.1
2.2
68.14
42.9

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045008
22438172 - 22577548
139377