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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22530754_22538524_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22530754 - 22538524
Intron Length:
7771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATATTTGTAAAT
Flanking Amino Acid:
PALRPRSRSLSPGRSPISFD
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.2
0.79
0.6
78.4
30.4
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
49.7
0.06
2
71.8
39.2

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325
ENSAPLT00000045008
22438172 - 22577548
139377