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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22545176_22548358_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22545176 - 22548358
Intron Length:
3183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
TTCTCTCTACCT
Flanking Amino Acid:
ARPARLLECLEFDPEEFYHL
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
82
0.72
0.8
76.8
31.5
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
57.4
0.31
2
80.09
42.2

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045008
22438172 - 22577548
139377
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325