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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22550664_22551313_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22550664 - 22551313
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAATT
Flanking Amino Acid:
DTPETDDSVESRGASVQSKK
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.4
0.75
0.7
76.5
32.1
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
63
0.49
1.6
75.27
42.3

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045008
22438172 - 22577548
139377
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325