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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22555249_22555691_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22555249 - 22555691
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAG
U12 Branch Point Sequence:
GTTGCATTATTT
Flanking Amino Acid:
GIVHRDLKPDNLLITSMGHI
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
55.8
0.15
1.5
55.1
42.1
Major PPT
80.8
0.69
0.7
73.3
31.7
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
51.8
0.14
2
73.8
43.2

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325
ENSAPLT00000045008
22438172 - 22577548
139377