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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22555825_22557267_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22555825 - 22557267
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGTAGGCTGACC
Flanking Amino Acid:
KDTREFLDKQVCGTPEYIAP
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
39.7
-0.8
2.5
56.17
42.2

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045008
22438172 - 22577548
139377
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325