About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22564426_22565463_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22564426 - 22565463
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
CTAACTTAACTG
Flanking Amino Acid:
DRSWVIGSPEILRKRLSMSE
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
42.6
-0.7
1.9
43.88
42.7

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045008
22438172 - 22577548
139377
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325