Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22565769_22570406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22565769 - 22570406

Intron Length:

4638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GTCATCACTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

GGTTTCCTAATT

Flanking Amino Acid:

TAVSSTSALADHHTCSPLAS

Intron Amino Acid Position:

1013

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

81.9

0.79

0.9

80.1

Major PPT

66.4

0.37

0.9

59.6

36.7

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

62.8

0.48

1.7

78.06

38.1

Associated Gene:

Gene:

MAST2

Ensembl Gene ID:

ENSAPLG00000006200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037078

22391224 - 22577548

186325