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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22570634_22572133_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22570634 - 22572133
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TTCTCATTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTCTTCTCAAAT
Flanking Amino Acid:
DIYTVHHMVWHVEEGGPANE
Intron Amino Acid Position:
1161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.3
0.59
1
73.2
36.1
Minor 5ss
44.4
-0.6
2.8
53.5
43.8
Minor BPS
57.5
0.32
1.7
72.8
44.1

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045008
22438172 - 22577548
139377
ENSAPLT00000037078
22391224 - 22577548
186325
ENSAPLT00000006479
22391224 - 22577548
186325