Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22572257_22573334_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22572257 - 22573334

Intron Length:

1078

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGACC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTGTTTCTGACA

Flanking Amino Acid:

HTEVVELILKSGNKVSISTT

Intron Amino Acid Position:

1202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

34.7

Major BPS

0.65

1.5

85.7

34.9

Major PPT

79.4

0.66

76.5

37.7

Minor 5ss

32.1

-2

3.3

43.2

44.2

Minor BPS

56.6

0.2

1.6

70.06

36.4

Associated Gene:

Gene:

MAST2

Ensembl Gene ID:

ENSAPLG00000006200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045008

22438172 - 22577548

139377

ENSAPLT00000037078

22391224 - 22577548

186325

ENSAPLT00000006479

22391224 - 22577548

186325