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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22593332_22594753_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22593332 - 22594753
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGATGTCAAACT
Flanking Amino Acid:
SKKGCYACSVVADGEVKHCV
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
39.8
-1.1
3
51.1
45.2
Minor BPS
44.3
-0.3
2.3
66
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102