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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22594925_22595303_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22594925 - 22595303
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTCCCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GCTAAGTTAACT
Flanking Amino Acid:
WLGIKNENIDDTYFVNEEDE
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.4
36.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82
0.72
0.7
80.3
25
Minor 5ss
38.5
-1.3
3.3
49.1
41.3
Minor BPS
49.2
0.02
2.3
70.56
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102