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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22595379_22595723_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22595379 - 22595723
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTCTTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTGAAGTAACA
Flanking Amino Acid:
QLRKIRDQYLVWLNHKGVRQ
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
70.9
40.9
Major BPS
69.8
0.49
1
61
37.5
Major PPT
79.3
0.66
0.9
76.6
32
Minor 5ss
37.1
-1.5
2.8
43.3
43.8
Minor BPS
44
-0.4
2.4
61.12
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102