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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22595901_22597069_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22595901 - 22597069
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGCTCT
5'SS Class:
major
3'SS Sequence:
CGCTTATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTGTCCTCACTG
Flanking Amino Acid:
RREGNDKEIERIMMNYEKLK
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
63.6
43.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79
0.65
0.9
72.8
36.5
Minor 5ss
45.6
-0.5
3.2
65.8
45.3
Minor BPS
54
-0
1.9
63.28
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102