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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22599077_22600538_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22599077 - 22600538
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTTGCAGTAAAA
Flanking Amino Acid:
KMQGDYTLTLRKGGNNKLIK
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.7
40.1
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
79
0.65
0.9
72
38.1
Minor 5ss
42.5
-0.8
2.9
60.1
44
Minor BPS
47.6
-0.1
2.4
69.75
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102