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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22600638_22602919_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22600638 - 22602919
Intron Length:
2282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCACTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACT
Flanking Amino Acid:
EAEWYWGDISREEVNDKLRD
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.2
0.54
0.8
65.5
35.8
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
67.8
0.64
1.8
89.13
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102