About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22603032_22618864_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22603032 - 22618864
Intron Length:
15833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTGTCTTTAATC
Flanking Amino Acid:
LIFYIEMDPPALPPKPPKPM
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
73.7
0.72
1.2
73.46
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006823
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007138
22592869 - 22618970
26102