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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22652663_22652971_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22652663 - 22652971
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCGTTTTGACCT
Flanking Amino Acid:
QKESKCLLMMFFSVVLIIFI
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
68.8
41.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74.1
0.54
0.8
65
36.4
Minor 5ss
32.7
-2
3.1
38
40.8
Minor BPS
49.7
0.06
1.7
67.42
44.1

Associated Gene:

Gene:
TSPAN1
Ensembl Gene ID:
ENSAPLG00000007619
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007920
22651858 - 22654976
3119