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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22653838_22654142_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22653838 - 22654142
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGCTGG
5'SS Class:
major
3'SS Sequence:
TTCTCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GTGCTCTCACCA
Flanking Amino Acid:
TQIWNLTMDEVGCCGLNNYT
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.9
44.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
78.4
0.64
0.7
77.7
24.3
Minor 5ss
36.7
-1.5
3.2
46.9
48.5
Minor BPS
47.2
-0.2
1.8
57.45
41.8

Associated Gene:

Gene:
TSPAN1
Ensembl Gene ID:
ENSAPLG00000007619
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007920
22651858 - 22654976
3119