Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22654281_22654694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22654281 - 22654694

Intron Length:

414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAACA

5'SS Class:

strong_major

3'SS Sequence:

GCTGCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

CCGTCCTCACCT

Flanking Amino Acid:

ESLAAASKAQGCFDQLLEDI

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.1

32.7

Major BPS

72.4

0.56

73.5

32.5

Major PPT

68.9

0.43

0.9

61.7

34.9

Minor 5ss

39.8

-1.1

2.8

Minor BPS

51.8

0.13

1.9

67.53

Associated Gene:

Gene:

TSPAN1

Ensembl Gene ID:

ENSAPLG00000007619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007920

22651858 - 22654976

3119