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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22662885_22663055_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22662885 - 22663055
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTGTTTTCACA
Flanking Amino Acid:
AYETEIHRLLGEAEVLDHSK
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
84
0.76
0.8
79.1
32.9
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
52.4
0.07
1.8
65.59
41.9

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771