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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22663101_22663710_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22663101 - 22663710
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGTCTTCAACA
Flanking Amino Acid:
VPNVQLKNVESLRKDAYETE
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73.8
0.54
0.9
69.6
35.5
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
64.9
0.46
1.6
71.13
41.5

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771