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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22663776_22663927_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22663776 - 22663927
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CTCTTTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAC
U12 Branch Point Sequence:
CTCTTTCTACCA
Flanking Amino Acid:
VGLNMNGYFHEAYFKKHKFN
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.9
33.8
Major BPS
48.4
-0.1
1
52.9
28.9
Major PPT
79.6
0.67
0.8
73.7
35.6
Minor 5ss
28.9
-2.4
3.1
33.6
35
Minor BPS
46.7
-0.2
1.9
58.44
42.1

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771