About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22664054_22664382_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22664054 - 22664382
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
GTGAGCATAAGC
Flanking Amino Acid:
LEPKWPTPEKLWDWDMWMRM
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
84.3
0.77
0.7
76.7
32
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
42.3
-0.6
2.2
52.71
44.3

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771