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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22665367_22665578_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22665367 - 22665578
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CCTTGCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCTTCTGACAT
Flanking Amino Acid:
SLTATFNLFPDAKFAVVLEE
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.5
0.6
0.8
68.8
31.8
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
48
-0
1.8
65.14
45.4

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771