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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22665854_22666898_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22665854 - 22666898
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
AACCCCACACAT
Flanking Amino Acid:
ITVFIDGYYEEPMDVVELFG
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
77.3
0.61
0.9
70.3
34.9
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
39.1
-0.7
1.9
52.11
41.6

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771