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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22668242_22668533_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22668242 - 22668533
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
GACTCTTCAAGC
Flanking Amino Acid:
DMWTFVGKKGGEVYGEKHAK
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
77.9
0.63
0.8
69
37.1
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
48.7
-0.1
1.8
56.28
42.2

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771