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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22668652_22669279_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22668652 - 22669279
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAG
U12 Branch Point Sequence:
CAGACCTCAGCT
Flanking Amino Acid:
RGRILIFTIKDEGSFHLKDT
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
49.8
-0
1.5
59.3
39.1
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
47.9
-0
1.9
62.45
46.9

Associated Gene:

Gene:
POMGNT1
Ensembl Gene ID:
ENSAPLG00000007878
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008271
22662169 - 22671939
9771