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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22741967_22742641_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22741967 - 22742641
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTGAATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAATT
Flanking Amino Acid:
GPRCMDSSQHEAFIRSILSK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73
0.52
0.9
70.5
39.9
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
66.8
0.61
1.3
79.72
37

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772