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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22742703_22744819_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22742703 - 22744819
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TGTTCTTTGAGT
Flanking Amino Acid:
PFRIPIPNYKGPTGLRALGI
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
84.3
0.77
0.9
81.2
36.5
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
68.7
0.67
1.6
83.64
37.6

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772