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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22744956_22745727_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22744956 - 22745727
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCTTTCTTGACT
Flanking Amino Acid:
LSAHEQLKIDKDKVPVHVVV
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
81.8
1.08
1
90.53
33.5

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772