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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22745798_22747650_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22745798 - 22747650
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCTGCTCTAACA
Flanking Amino Acid:
SRVLRPHQREGVKFLWECVT
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.3
0.41
1.1
63.6
41.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
52.6
0.08
1.8
63.12
43.7

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772