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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22747940_22748415_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22747940 - 22748415
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGAAA
5'SS Class:
major
3'SS Sequence:
TTTCCATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCATTCACA
Flanking Amino Acid:
GSKEEIDHKLVGFMNQRGMR
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.4
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.8
76.4
31
Minor 5ss
29.9
-2.3
3.3
39.1
46.3
Minor BPS
60.1
0.31
2
78.35
37.8

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772