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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22748541_22750699_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22748541 - 22750699
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CTCTTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TCTTTTTCAAAG
Flanking Amino Acid:
GSVGLVICDEGHRLKNSENQ
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
75.1
0.56
1
77.1
29
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
52.9
-0
1.7
60.04
42.2

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772