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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22750851_22752051_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22750851 - 22752051
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACCTTTTCATCT
Flanking Amino Acid:
LVHFVNSGILGTAQEFKRHF
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
100
1.24
0.5
100
0
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
47.3
-0.1
1.8
61.3
43.3

Associated Gene:

Gene:
RAD54L
Ensembl Gene ID:
ENSAPLG00000006389
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006651
22741727 - 22758498
16772