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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22761914_22762364_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22761914 - 22762364
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTGCTGTCAATC
Flanking Amino Acid:
LLLLQDPILQEISFSFCRLF
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
82.6
0.73
0.7
78.3
29.8
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
43.4
-0.5
2.1
52.19
39.4

Associated Gene:

Gene:
LRRC41
Ensembl Gene ID:
ENSAPLG00000006638
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032379
22759900 - 22769336
9437
ENSAPLT00000006902
22759900 - 22769336
9437
ENSAPLT00000044064
22759900 - 22769336
9437