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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22766781_22767557_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22766781 - 22767557
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTGGTTGACT
Flanking Amino Acid:
VMKTRPPNSESITCWRKKFL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
0.9
71.3
38.5
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
48
-0
2.5
70.4
47

Associated Gene:

Gene:
LRRC41
Ensembl Gene ID:
ENSAPLG00000006638
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044064
22759900 - 22769336
9437
ENSAPLT00000032379
22759900 - 22769336
9437
ENSAPLT00000006902
22759900 - 22769336
9437