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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22778690_22778862_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22778690 - 22778862
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TGTCATCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTCTTGTCATCT
Flanking Amino Acid:
ADGGRAWLDEFTGNIVDPSL
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
67.4
43.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
76.5
0.6
0.9
73.3
36.8
Minor 5ss
37.7
-1.4
2.8
48.5
41.6
Minor BPS
43.1
-0.4
2.4
62.9
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007374
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007645
22778203 - 22785635
7433