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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22779475_22779721_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22779475 - 22779721
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
AGGAAGTCAACG
Flanking Amino Acid:
TVPPIPFNEEVYSSSAPLRV
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
80.4
0.68
0.8
72.6
37.7
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
38.7
-1
2.2
40.92
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007374
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007645
22778203 - 22785635
7433