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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22779847_22780210_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22779847 - 22780210
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CGTCCCATACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTGCTTATTA
Flanking Amino Acid:
VNGPVSGILSVPSALGPMAR
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
64.5
0.33
1
55.8
38.7
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
56.1
0.19
2
70.6
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007374
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007645
22778203 - 22785635
7433