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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22780252_22781031_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22780252 - 22781031
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TCTTTTTCCACA
Flanking Amino Acid:
CGLKPTAKRLSLSGVNGPVS
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
87.6
0.84
0.6
83.5
24.8
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
49.6
-0
1.9
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007374
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007645
22778203 - 22785635
7433