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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22805551_22805869_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22805551 - 22805869
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTGGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
CTTCCTTCCACC
Flanking Amino Acid:
ESVLYSYMGKALEVTQEVNC
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
49.5
-0
1.8
60.3
40.4
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
48.7
-0.1
2
63.67
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020907
22792201 - 22807190
14990
ENSAPLT00000007787
22792880 - 22809454
16575