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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22805984_22806980_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22805984 - 22806980
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTACCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AATTTCTTACCC
Flanking Amino Acid:
EKAARRFKRENPGTQTAHIL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.6
0.73
0.8
77
31.3
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
66.8
0.51
1.6
73.55
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020907
22792201 - 22807190
14990
ENSAPLT00000007787
22792880 - 22809454
16575