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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22849087_22849541_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22849087 - 22849541
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
GTAGAAATAACC
Flanking Amino Acid:
LNCKRASPKAESPISATVTP
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
61.3
0.28
1
62
30.6
Major PPT
74.7
0.56
0.9
67.7
32.4
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
43.6
-0.5
2
55.79
41.4

Associated Gene:

Gene:
DMBX1
Ensembl Gene ID:
ENSAPLG00000008404
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008731
22848686 - 22858795
10110