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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22849897_22851173_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22849897 - 22851173
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTA
5'SS Class:
major
3'SS Sequence:
TGTGGCATTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACCATTT
Flanking Amino Acid:
CTNLPEARVQVWFKNRRAKF
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.6
43.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
59.5
0.21
1.2
57.5
42.4
Minor 5ss
33.3
-1.9
3.6
47.7
47.8
Minor BPS
45.5
-0.2
2.3
74.5
42.2

Associated Gene:

Gene:
DMBX1
Ensembl Gene ID:
ENSAPLG00000008404
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008731
22848686 - 22858795
10110