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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22889379_22890458_R

Intron Information:

Intron Rank:
130007
Intron Class:
major
Intron Phase:
Intron Coordinates:
22889379 - 22890458
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
CCTCTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.9
33.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.5
0.64
0.7
72.1
32.5
Minor 5ss
36.4
-1.5
3.4
50.3
40.4
Minor BPS
63.7
0.43
1.7
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017141
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017638
22889177 - 22892493
3317