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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22982652_22982982_R

Intron Information:

Intron Rank:
135413
Intron Class:
major
Intron Phase:
Intron Coordinates:
22982652 - 22982982
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACCTTT
5'SS Class:
major
3'SS Sequence:
TTTTTGAATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
74.8
38.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.7
0.69
0.9
78.8
38.6
Minor 5ss
49.9
-0
2.8
73.2
43.7
Minor BPS
63.5
0.5
1.3
75.92
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020283
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029697
22982022 - 22983120
1099