About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23013751_23014312_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23013751 - 23014312
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTAAATTAATT
Flanking Amino Acid:
DRGEVCRVCQNKLFESIQEG
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.3
0.82
0.7
79.8
32.2
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
62
0.46
1.8
83.39
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024709
23010781 - 23032545
21765
ENSAPLT00000008839
23010781 - 23031223
20443