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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23015496_23018136_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23015496 - 23018136
Intron Length:
2641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTTTCTGTAACA
Flanking Amino Acid:
ASALDFLHTKGIAHRDLKPE
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
72.9
0.51
0.9
69
37
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
72.2
0.69
2
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024709
23010781 - 23032545
21765
ENSAPLT00000008839
23010781 - 23031223
20443