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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23018242_23021415_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23018242 - 23021415
Intron Length:
3174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTACTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
TCCTCTTCCACC
Flanking Amino Acid:
IETLYQCQGNKLHPGPYPKA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
80.2
0.68
0.9
73.5
36.8
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
49.3
-0
2
61.68
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032550
23018199 - 23031223
13025